Description Usage Arguments Value Author(s) Examples
View source: R/predict_topology_from_sequence.R
Run PureseqTM directy on a protein sequence
1 2 3 4 | predict_topology_from_sequence(
protein_sequence,
folder_name = get_default_pureseqtm_folder()
)
|
protein_sequence |
a protein sequence, with
the amino acids as capitals, for
example |
folder_name |
superfolder of PureseqTM.
The superfolder's name is |
a topology as a string of zeroes and ones, where a one denotes that the corresponding amino acid is located within the membrane.
Richèl J.C. Bilderbeek
1 2 3 4 5 6 7 | if (is_pureseqtm_installed()) {
protein_sequence <- paste0(
"QEKNWSALLTAVVIILTIAGNILVIMAVSLEKKLQNATNYFLM",
"SLAIADMLLGFLVMPVSMLTILYGYRWP"
)
predict_topology_from_sequence(protein_sequence)
}
|
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