mock_predict_topology: Do a mock prediction of the topology of proteins

In pureseqtmr: Predict Transmembrane Protein Topology

Do a mock prediction of the topology of proteins

Description

Uses predict_topology for doing a real prediction

Usage

mock_predict_topology(fasta_filename)

Arguments

fasta_filename

path to a FASTA file

Value

a tibble with the columns 'name' and 'topology', where the 'name' column hold all the proteins' names, and 'topology' contains all respective topologies.

Author(s)

Richèl J.C. Bilderbeek

Examples

fasta_filename <- tempfile()
save_tibble_as_fasta_file(
  t = tibble::tibble(
    name = c("A", "B"),
    sequence = c("FAMILYVW", "VWFAMILY")
  ),
  fasta_filename = fasta_filename
)
mock_predict_topology(fasta_filename)

pureseqtmr documentation built on April 6, 2023, 5:20 p.m.