mock_predict_topologies_from_sequences: Do a mock prediction directy on a protein sequence, as can be...

In pureseqtmr: Predict Transmembrane Protein Topology

Do a mock prediction directy on a protein sequence, as can be useful in testing Use predict_topologies_from_sequences for doing a real prediction.

Description

Do a mock prediction directy on a protein sequence, as can be useful in testing Use predict_topologies_from_sequences for doing a real prediction.

Usage

mock_predict_topologies_from_sequences(protein_sequences)

Arguments

protein_sequences

one ore more protein sequence, each sequence with the amino acids as capitals, for example MEILCEDNTSLSSIPNSL

Value

a topology as a string of zeroes and ones, where a one denotes that the corresponding amino acid is located within the membrane.

Author(s)

Richèl J.C. Bilderbeek

Examples

protein_sequence <- paste0(
  "QEKNWSALLTAVVIILTIAGNILVIMAVSLEKKLQNATNYFLM",
  "SLAIADMLLGFLVMPVSMLTILYGYRWP"
)
mock_predict_topologies_from_sequences(protein_sequence)

pureseqtmr documentation built on April 6, 2023, 5:20 p.m.