run_pureseqtm_proteome: Run PureseqTM on a proteome

Description Usage Arguments Value Author(s) See Also Examples

View source: R/run_pureseqtm_proteome.R

Description

Run PureseqTM on a proteome

Usage

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run_pureseqtm_proteome(
  fasta_filename,
  folder_name = get_default_pureseqtm_folder(),
  topology_filename = tempfile(fileext = ".top")
)

Arguments

fasta_filename

path to a FASTA file

folder_name

superfolder of PureseqTM. The superfolder's name is /home/[user_name]/.local/share by default, as can be obtained by get_default_pureseqtm_folder

topology_filename

name of the file to save a protein's topology to

Value

the topology of the proteome, using the same output as PureseqTM. Use predict_topology to get the topology as a tibble

Author(s)

Richèl J.C. Bilderbeek

See Also

Examples

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if (is_pureseqtm_installed()) {
  fasta_filename <- get_example_filename("1bhaA.fasta")
  run_pureseqtm_proteome(fasta_filename)
}

Example output



pureseqtmr documentation built on July 30, 2020, 5:13 p.m.