plot_topology: Plot the topology

In pureseqtmr: Predict Transmembrane Protein Topology

Plot the topology

Description

Plot the topology

Usage

plot_topology(topology)

Arguments

topology

the topology as a tibble with the columns 'name' and 'topology', where the 'name' column hold all the proteins' names, and 'topology' contains the respective topologies as strings.

Value

a ggplot that displays the topology of one or more proteins

Author(s)

Richèl J.C. Bilderbeek

Examples

if (is_pureseqtm_installed() && is_on_ci()) {
  fasta_filename <- get_example_filename("test_proteome.fasta")
  topology <- predict_topology(fasta_filename)
  plot_topology(topology)
}

pureseqtmr documentation built on April 6, 2023, 5:20 p.m.