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#' Count the number of transmembrane helices in a topology
#' @inheritParams default_params_doc
#' @return a \link[tibble]{tibble} with the number of
#' TMHs per protein
#' @examples
#' if (is_pureseqtm_installed()) {
#' tally_tmhs(
#' predict_topology(
#' get_example_filename("1bhaA.fasta")
#' )
#' )
#' }
#' @export
tally_tmhs <- function(
topology
) {
pureseqtmr::check_topology(topology)
tally <- tibble::tibble(
name = topology$name,
n_tmhs = NA
)
n_rows <- nrow(tally)
for (i in seq_len(n_rows)) {
t <- topology$topology[i]
tally$n_tmhs[i] <- pureseqtmr::count_n_tmhs(t)
}
tally
}
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