classify.muts.bgc: Count the number of mutations of each gBGC type on each...
In rphast: Interface to 'PHAST' Software for Comparative Genomics
Description
Usage
Arguments
Value
Author(s)
Description
Count the number of mutations of each gBGC type on each branch
Usage
1
classify.muts.bgc(align, mod, branch = NULL)
Arguments
align
An alignment of type msa
mod
An evolutionary model of type tm
branch
A character vector giving the name(s) of the branch or branches we are interested in.
Value
A data frame with a row for each branch, giving the number of expected weak (A or T)
to strong (C or G) mutations, strong to weak, weak to weak, and strong to strong. I
Author(s)
Melissa J. Hubisz
rphast documentation built on May 1, 2019, 9:26 p.m.
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Description Usage Arguments Value Author(s)
Description
Count the number of mutations of each gBGC type on each branch
Usage
1 | classify.muts.bgc(align, mod, branch = NULL)
|
Arguments
align |
An alignment of type |
mod |
An evolutionary model of type |
branch |
A character vector giving the name(s) of the branch or branches we are interested in. |
Value
A data frame with a row for each branch, giving the number of expected weak (A or T) to strong (C or G) mutations, strong to weak, weak to weak, and strong to strong. I
Author(s)
Melissa J. Hubisz
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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