apply.bgc.sel: Apply bgc+selection parameters to a matrix
In rphast: Interface to 'PHAST' Software for Comparative Genomics
Description
Usage
Arguments
Value
Author(s)
Description
Apply bgc+selection parameters to a matrix
Usage
1
apply.bgc.sel(m, bgc = 0, sel = 0, alphabet = "ACGT")
Arguments
m
A transition matrix
bgc
The bgc (biased gene conversion) parameter, population-scaled.
sel
The selection parameter (population-scaled)
alphabet
The alphabet used for nucleotide states
Value
A matrix with bgc+sel applied. This matrix may no longer be
time reversible.
Author(s)
Melissa J. Hubisz and Adam Siepel
rphast documentation built on May 1, 2019, 9:26 p.m.
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Description Usage Arguments Value Author(s)
Description
Apply bgc+selection parameters to a matrix
Usage
1 | apply.bgc.sel(m, bgc = 0, sel = 0, alphabet = "ACGT")
|
Arguments
m |
A transition matrix |
bgc |
The bgc (biased gene conversion) parameter, population-scaled. |
sel |
The selection parameter (population-scaled) |
alphabet |
The alphabet used for nucleotide states |
Value
A matrix with bgc+sel applied. This matrix may no longer be time reversible.
Author(s)
Melissa J. Hubisz and Adam Siepel
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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