as.data.frame.feat: Features to Data Frame
In rphast: Interface to 'PHAST' Software for Comparative Genomics

Description Usage Arguments Value Author(s) See Also Examples

Convert a features object to a data frame

1 2	## S3 method for class 'feat' as.data.frame(x, row.names = NULL, optional = FALSE, ...)

`x`	an object of type `feat`
`row.names`	optional names for each feature
`optional`	logical, if `TRUE`, setting row names and converting column names (to syntactic names: see `make.names` is optional.
`...`	additional arguments to be passed to other methods

a data frame containing features data

Melissa J. Hubisz and Adam Siepel

feat for a description of features data frames, and as.pointer.feat for conversion in the other direction.

seq <- rep("hg18.chr6", 10)
src <- rep("fake_example", 10)
feature <- rep("CDS", 10)
start <- seq(1, 100, by=10)
end <- seq(10, 100, by=10)
f1 <- feat(seq, src, feature, start, end, pointer.only=TRUE)
summary(f1)
f2 <- as.data.frame(f1)
summary(f2)
dim(f2)