as.pointer.msa: MSA To Pointer
In rphast: Interface to 'PHAST' Software for Comparative Genomics

Take an MSA stored in R and return one stored by reference

1	as.pointer.msa(src)

src

an MSA object stored by value in R

an MSA object stored by reference as a pointer to an object created in C.

Melissa J. Hubisz and Adam Siepel

msa for details on MSA storage options.

m <- msa(seqs=c("A--ACGTAT", "AG-AGGTAA", "AGGAGGTAG"),
         names=c("human", "mouse", "rat"))
m
m <- as.pointer.msa(m)
m

rphast documentation built on May 1, 2019, 9:26 p.m.

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