concat.msa: Concatenate msa objects

In rphast: Interface to 'PHAST' Software for Comparative Genomics

Description

If the MSAs do not contain the same set of sequences, the sequences will be added to each MSA and filled with missing data. The order of sequences is taken from the first MSA, and sequences are added to this as necessary.

Usage

concat.msa(msas, ordered = FALSE, pointer.only = FALSE)

Arguments

msas	A list of MSA objects to concatenate together.
ordered	If FALSE, disregard the order of columns in the combined MSA.
pointer.only	(Advanced use only, for very large MSA objects) If TRUE, return object will be a pointer to an object stored in C.

Value

An object of type MSA

Note

None of the msas passed to this function will be altered, even if they are stored as pointers to objects in C.

Author(s)

Melissa J. Hubisz and Adam Siepel

rphast documentation built on May 1, 2019, 9:26 p.m.