concat.msa: Concatenate msa objects

Description Usage Arguments Value Note Author(s)

View source: R/msa.R

Description

If the MSAs do not contain the same set of sequences, the sequences will be added to each MSA and filled with missing data. The order of sequences is taken from the first MSA, and sequences are added to this as necessary.

Usage

1
concat.msa(msas, ordered = FALSE, pointer.only = FALSE)

Arguments

msas

A list of MSA objects to concatenate together.

ordered

If FALSE, disregard the order of columns in the combined MSA.

pointer.only

(Advanced use only, for very large MSA objects) If TRUE, return object will be a pointer to an object stored in C.

Value

An object of type MSA

Note

None of the msas passed to this function will be altered, even if they are stored as pointers to objects in C.

Author(s)

Melissa J. Hubisz and Adam Siepel


rphast documentation built on May 1, 2019, 9:26 p.m.