coord.range.msa: Obtain the range of coordinates in a MSA objects

Description Usage Arguments Value Author(s)

View source: R/msa.R

Description

Obtain the range of coordinates in a MSA objects

Usage

1
coord.range.msa(x, refseq = names.msa(x)[1])

Arguments

x

An object of type msa

refseq

A character string identifying the reference sequence (or NULL to use frame of reference of entire alignment)

Value

A numeric vector of length 2 giving the smallest and highest coordinate in the alignment. If refseq is the first sequence in alignment, offset.msa(x) is added to the range, otherwise it is ignored.

Author(s)

Melissa J. Hubisz and Adam Siepel


rphast documentation built on May 1, 2019, 9:26 p.m.