coord.range.msa: Obtain the range of coordinates in a MSA objects
In rphast: Interface to 'PHAST' Software for Comparative Genomics
Description
Usage
Arguments
Value
Author(s)
Description
Obtain the range of coordinates in a MSA objects
Usage
1
coord.range.msa(x, refseq = names.msa(x)[1])
Arguments
x
An object of type msa
refseq
A character string identifying the reference sequence
(or NULL to use frame of reference of entire alignment)
Value
A numeric vector of length 2 giving the smallest and highest
coordinate in the alignment. If refseq is the first sequence in alignment,
offset.msa(x) is added to the range, otherwise it is ignored.
Author(s)
Melissa J. Hubisz and Adam Siepel
rphast documentation built on May 1, 2019, 9:26 p.m.
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Description Usage Arguments Value Author(s)
Description
Obtain the range of coordinates in a MSA objects
Usage
1 | coord.range.msa(x, refseq = names.msa(x)[1])
|
Arguments
x |
An object of type |
refseq |
A character string identifying the reference sequence (or NULL to use frame of reference of entire alignment) |
Value
A numeric vector of length 2 giving the smallest and highest coordinate in the alignment. If refseq is the first sequence in alignment, offset.msa(x) is added to the range, otherwise it is ignored.
Author(s)
Melissa J. Hubisz and Adam Siepel
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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