from.pointer.msa: MSA From Pointer

In rphast: Interface to 'PHAST' Software for Comparative Genomics

Description

Take an MSA stored by reference and return one stored in R

Usage

from.pointer.msa(src)

Arguments

src	an MSA object stored by reference

Value

an MSA object stored in R. If src is already stored in R, returns a copy of the object.

Author(s)

Melissa J. Hubisz and Adam Siepel

See Also

msa for details on MSA storage options.

Examples

m <- msa(seqs=c("A--ACGTAT", "AG-AGGTAA", "AGGAGGTAG"),
         names=c("human", "mouse", "rat"), pointer.only=TRUE)
m
m <- from.pointer.msa(m)
m

rphast documentation built on May 1, 2019, 9:26 p.m.