alphabet.msa: MSA Alphabet
In rphast: Interface to 'PHAST' Software for Comparative Genomics
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Returns the alphabet used by an MSA object.
Usage
1
alphabet.msa(x)
Arguments
x
an MSA object
Value
the valid non-missing-data characters for an MSA object.
Author(s)
Melissa J. Hubisz and Adam Siepel
Examples
1
2
3
m <- msa(seqs=c("a--acgtaa", "NN-nnnTAA", "AGGAGGTAG"),
names=c("human", "mouse", "rat"))
alphabet.msa(m)
Example output
[1] "ACGT"
rphast documentation built on May 1, 2019, 9:26 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
Returns the alphabet used by an MSA object.
Usage
1 | alphabet.msa(x)
|
Arguments
x |
an MSA object |
Value
the valid non-missing-data characters for an MSA object.
Author(s)
Melissa J. Hubisz and Adam Siepel
Examples
1 2 3 | m <- msa(seqs=c("a--acgtaa", "NN-nnnTAA", "AGGAGGTAG"),
names=c("human", "mouse", "rat"))
alphabet.msa(m)
|
Example output
[1] "ACGT"
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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