gc.content.msa: Get the fraction of G's and C's in an alignment
In rphast: Interface to 'PHAST' Software for Comparative Genomics
Description
Usage
Arguments
Value
Author(s)
Description
Get the fraction of G's and C's in an alignment
Usage
1
gc.content.msa(x, seq = NULL, ignore.missing = TRUE, ignore.gaps = TRUE)
Arguments
x
An object of type msa
seq
A vector of character strings identifying the sequence(s)
to use in the base frequency tabulation. If NULL, use all
sequences.
ignore.missing
If FALSE, count missing data in the
denominator.
ignore.gaps
If TRUE, count gaps in the denominator.
Value
The fraction of bases which are C's and G's
Author(s)
Melissa J. Hubisz
rphast documentation built on May 1, 2019, 9:26 p.m.
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Description Usage Arguments Value Author(s)
Description
Get the fraction of G's and C's in an alignment
Usage
1 | gc.content.msa(x, seq = NULL, ignore.missing = TRUE, ignore.gaps = TRUE)
|
Arguments
x |
An object of type |
seq |
A vector of character strings identifying the sequence(s)
to use in the base frequency tabulation. If |
ignore.missing |
If |
ignore.gaps |
If |
Value
The fraction of bases which are C's and G's
Author(s)
Melissa J. Hubisz
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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