get.rate.matrix.params.tm: Get the parameters describing a rate matrix

Description Usage Arguments Value Note Author(s)

View source: R/treeModel.R

Description

Get the parameters describing a rate matrix

Usage

1

Arguments

x

An object of type tm.

Value

A numeric vector of parameters which can be used to describe the transition matrix under the substitution model indicated in x. May be NULL for certain models which have no parameters (JC69, F81). The meaning of the parameters is described in set.rate.matrix.tm.

Note

The params returned may not describe the rate matrix passed in, if the rate matrix does not follow the model indicated in x.

Author(s)

Melissa J. Hubisz and Adam Siepel


rphast documentation built on May 1, 2019, 9:26 p.m.