flatten.feat: Combine adjacent features with the same "feature" field

In rphast: Interface to 'PHAST' Software for Comparative Genomics

Description

Combine adjacent features with the same "feature" field

Usage

flatten.feat(x, weightedAverageScore = FALSE, minScore = FALSE)

Arguments

x	An object of type feat
weightedAverageScore	If TRUE, scores of merged features are given by the average of those features, weighted by their original lengths. Otherwise, scores of merged features are simply summed.
minScore	If TRUE, scores of merged features are given by the minimum score of the combined features.

Value

A features object in which adjacent features are combined into one longer feature.

Note

If x is stored as a pointer to a C structure, then x will be modified to the return value.

Author(s)

Melissa J. Hubisz and Adam Siepel

rphast documentation built on May 1, 2019, 9:26 p.m.