check_rec_pres: Helper function to check whether receptor is present in...

In scITD: Single-Cell Interpretable Tensor Decomposition

Helper function to check whether receptor is present in target cell type

Description

Helper function to check whether receptor is present in target cell type

Usage

check_rec_pres(
  container,
  lig_ct_exp,
  rec_elements,
  target_ct,
  percentile_exp_rec
)

Arguments

container	environment Project container that stores sub-containers for each cell type as well as results and plots from all analyses
lig_ct_exp	numeric Scaled expression for a ligand in the source cell type
rec_elements	character One or more components of a receptor complex
target_ct	character The name of the target cell type
percentile_exp_rec	numeric The percentile of ligand expression above which all donors need to have at least 5 cells expressing the receptor.

Value

A logical indicating whether receptor is present or not.

scITD documentation built on Sept. 8, 2023, 5:11 p.m.