compare_decompositions: Plot a pairwise comparison of factors from two separate...

In scITD: Single-Cell Interpretable Tensor Decomposition

Plot a pairwise comparison of factors from two separate decompositions

Description

Plot a pairwise comparison of factors from two separate decompositions

Usage

compare_decompositions(
  tucker_res1,
  tucker_res2,
  decomp_names,
  meta_anno1 = NULL,
  meta_anno2 = NULL,
  use_text = TRUE
)

Arguments

tucker_res1	list The container$tucker_res from first decomposition
tucker_res2	list The container$tucker_res from first decomposition
decomp_names	character Names of the two decompositions that will go on the axes of the heatmap
meta_anno1	matrix The result of calling get_meta_associations() corresponding to the first decomposition, which is stored in container$meta_associations (default=NULL)
meta_anno2	matrix The result of calling get_meta_associations() corresponding to the second decomposition, which is stored in container$meta_associations (default=NULL)
use_text	logical If TRUE, then displays correlation coefficients in cells (default=TRUE)

Value

No return value, as the resulting plots are drawn.

Examples

test_container <- run_tucker_ica(test_container, ranks=c(2,4),
tucker_type='regular', rotation_type='hybrid')
tucker_res1 <- test_container$tucker_results
test_container <- run_tucker_ica(test_container, ranks=c(2,4),
tucker_type='regular', rotation_type='ica_dsc')
tucker_res2 <- test_container$tucker_results
compare_decompositions(tucker_res1,tucker_res2,c('hybrid_method','ica_method'))

scITD documentation built on Sept. 8, 2023, 5:11 p.m.