get_indv_subtype_associations: Compute subtype proportion-factor association p-values for...

In scITD: Single-Cell Interpretable Tensor Decomposition

Compute subtype proportion-factor association p-values for all subclusters of a given major cell type

Description

Compute subtype proportion-factor association p-values for all subclusters of a given major cell type

Usage

get_indv_subtype_associations(container, donor_props, factor_select)

Arguments

container	environment Project container that stores sub-containers for each cell type as well as results and plots from all analyses
donor_props	matrix Donor proportions of subtypes
factor_select	numeric The factor to get associations for

Value

A vector of association statistics each cell subtype against a selected factor.

scITD documentation built on Sept. 8, 2023, 5:11 p.m.