API for scITD
Single-Cell Interpretable Tensor Decomposition

Global functions
apply_combat Man page Source code
calculate_fiber_fstats Man page Source code
check_rec_pres Man page Source code
clean_data Man page Source code
colMeanVars Man page Source code
compare_decompositions Man page Source code
compute_LR_interact Man page Source code
compute_associations Man page Source code
compute_donor_props Man page Source code
convert_gn Man page Source code
determine_ranks_tucker Man page Source code
form_tensor Man page Source code
get_all_lds_factor_plots Man page Source code
get_callouts_annot Man page Source code
get_ctype_exp_var Man page Source code
get_ctype_prop_associations Man page Source code
get_ctype_subc_prop_associations Man page Source code
get_ctype_vargenes Man page Source code
get_donor_meta Man page Source code
get_factor_exp_var Man page Source code
get_fstats_pvals Man page Source code
get_gene_modules Man page Source code
get_gene_set_vectors Man page Source code
get_indv_subtype_associations Man page Source code
get_intersecting_pathways Man page Source code
get_leading_edge_genes Man page Source code
get_lm_pvals Man page Source code
get_max_correlations Man page Source code
get_meta_associations Man page Source code
get_min_sig_genes Man page Source code
get_module_enr Man page Source code
get_normalized_variance Man page Source code
get_num_batch_ranks Man page Source code
get_one_factor Man page Source code
get_pseudobulk Man page Source code
get_real_fstats Man page Source code
get_reconstruct_errors_svd Man page Source code
get_significance_vectors Man page Source code
get_subclust_de_hmaps Man page Source code
get_subclust_enr_dotplot Man page Source code
get_subclust_enr_fig Man page Source code
get_subclust_enr_hmap Man page Source code
get_subclust_umap Man page Source code
get_subclusters Man page Source code
get_subtype_prop_associations Man page Source code
get_sums Man page Source code
ht_clusters Man page Source code
identify_sex_metadata Man page Source code
initialize_params Man page Source code
instantiate_scMinimal Man page Source code
make_new_container Man page Source code
merge_small_clusts Man page Source code
nmf_unfolded Man page Source code
norm_var_helper Man page Source code
normalize_counts Man page Source code
normalize_pseudobulk Man page Source code
parse_data_by_ctypes Man page Source code
pca_unfolded Man page Source code
plotDEheatmap_conos Man page Source code
plot_donor_matrix Man page Source code
plot_donor_props Man page Source code
plot_donor_sig_genes Man page Source code
plot_dscore_enr Man page Source code
plot_gsea_hmap Man page Source code
plot_gsea_hmap_w_similarity Man page Source code
plot_gsea_sub Man page Source code
plot_loadings_annot Man page Source code
plot_mod_and_lig Man page Source code
plot_multi_module_enr Man page Source code
plot_rec_errors_bar_svd Man page Source code
plot_rec_errors_line_svd Man page Source code
plot_scores_by_meta Man page Source code
plot_select_sets Man page Source code
plot_stability_results Man page Source code
plot_subclust_associations Man page Source code
prep_LR_interact Man page Source code
reduce_dimensions Man page Source code
reduce_to_vargenes Man page Source code
render_multi_plots Man page Source code
reshape_loadings Man page Source code
run_fgsea Man page Source code
run_gsea_one_factor Man page Source code
run_hypergeometric_gsea Man page Source code
run_jackstraw Man page Source code
run_stability_analysis Man page Source code
run_tucker_ica Man page Source code
sample_fibers Man page Source code
scale_fontsize Man page Source code
scale_variance Man page Source code
seurat_to_scMinimal Man page Source code
shuffle_fibers Man page Source code
stack_tensor Man page Source code
stop_wrap Man page
subset_scMinimal Man page Source code
test_container Man page
tucker_ica_helper Man page Source code
tucker_sparse Man page Source code
update_params Man page Source code
vargenes_anova Man page Source code
scITD documentation built on Nov. 4, 2021, 1:06 a.m.