plot_donor_props: Plot donor celltype/subtype proportions against each factor

In scITD: Single-Cell Interpretable Tensor Decomposition

Plot donor celltype/subtype proportions against each factor

Description

Plot donor celltype/subtype proportions against each factor

Usage

plot_donor_props(
  donor_props,
  donor_scores,
  significance,
  ctype_mapping = NULL,
  stat_type = "adj_pval",
  n_col = 2
)

Arguments

donor_props	data.frame Donor proportions as output from compute_donor_props()
donor_scores	data.frame Donor scores from tucker results
significance	numeric F-Statistics as output from compute_associations()
ctype_mapping	character The cell types corresponding with columns of donor_props (default=NULL)
stat_type	character Either "fstat" to get F-Statistics, "adj_rsq" to get adjusted R-squared values, or "adj_pval" to get adjusted pvalues (default='adj_pval')
n_col	numeric The number of columns to organize the plots into (default=2)

Value

A cowplot figure of ggplot objects for proportions of each cell type against donor factor scores for each factor.

scITD documentation built on Sept. 8, 2023, 5:11 p.m.