Files in scITD
Single-Cell Interpretable Tensor Decomposition
MD5
README.md
NAMESPACE
DESCRIPTION
R/RcppExports.R
R/get_meta_associations.R
R/get_prop_associations.R
R/manage_scMinimal.R
R/plot_tucker.R
R/data.R
R/run_gsea.R
R/get_LR_interact.R
R/run_jackstraw.R
R/test_stability.R
R/run_tucker_ica.R
R/manage_container.R
R/form_tensor.R
R/determine_ranks_tucker.R
R/convert_gn.R
src/RcppExports.cpp
src/get_sums.cpp
src/colMeanVars.cpp
inst/scITD_overview_v2.jpg
inst/scITD_logo.png
tests/testthat.R
tests/testthat/test_functions.R
data/test_container.RData
man/plot_donor_props.Rd
man/get_subclust_enr_hmap.Rd
man/scale_variance.Rd
man/get_significance_vectors.Rd
man/plotDEheatmap_conos.Rd
man/reshape_loadings.Rd
man/project_new_data.Rd
man/reduce_dimensions.Rd
man/colMeanVars.Rd
man/subset_scMinimal.Rd
man/stack_tensor.Rd
man/normalize_counts.Rd
man/get_ctype_exp_var.Rd
man/get_subclust_enr_dotplot.Rd
man/ht_clusters.Rd
man/calculate_fiber_fstats.Rd
man/plot_gsea_hmap_w_similarity.Rd
man/plot_donor_sig_genes.Rd
man/get_intersecting_pathways.Rd
man/merge_small_clusts.Rd
man/get_factor_exp_var.Rd
man/update_params.Rd
man/form_tensor.Rd
man/get_callouts_annot.Rd
man/seurat_to_scMinimal.Rd
man/plot_gsea_sub.Rd
man/compare_decompositions.Rd
man/get_subclust_enr_fig.Rd
man/run_hypergeometric_gsea.Rd
man/compute_donor_props.Rd
man/run_jackstraw.Rd
man/count_word.Rd
man/render_multi_plots.Rd
man/get_meta_associations.Rd
man/plot_rec_errors_line_svd.Rd
man/pca_unfolded.Rd
man/get_real_fstats.Rd
man/reduce_to_vargenes.Rd
man/get_indv_subtype_associations.Rd
man/initialize_params.Rd
man/parse_data_by_ctypes.Rd
man/test_container.Rd
man/vargenes_anova.Rd
man/plot_stability_results.Rd
man/plot_mod_and_lig.Rd
man/compute_LR_interact.Rd
man/apply_combat.Rd
man/get_subclust_de_hmaps.Rd
man/get_subclusters.Rd
man/get_gene_modules.Rd
man/plot_loadings_annot.Rd
man/plot_dscore_enr.Rd
man/get_subtype_prop_associations.Rd
man/get_one_factor.Rd
man/compute_associations.Rd
man/plot_scores_by_meta.Rd
man/identify_sex_metadata.Rd
man/plot_donor_matrix.Rd
man/get_leading_edge_genes.Rd
man/get_normalized_variance.Rd
man/normalize_pseudobulk.Rd
man/is_GO_id.Rd
man/plot_gsea_hmap.Rd
man/stop_wrap.Rd
man/get_ctype_vargenes.Rd
man/sample_fibers.Rd
man/run_stability_analysis.Rd
man/plot_rec_errors_bar_svd.Rd
man/get_max_correlations.Rd
man/get_donor_meta.Rd
man/get_pseudobulk.Rd
man/nmf_unfolded.Rd
man/check_rec_pres.Rd
man/get_fstats_pvals.Rd
man/instantiate_scMinimal.Rd
man/get_reconstruct_errors_svd.Rd
man/make_new_container.Rd
man/get_lm_pvals.Rd
man/prep_LR_interact.Rd
man/tucker_ica_helper.Rd
man/plot_select_sets.Rd
man/run_gsea_one_factor.Rd
man/get_ctype_subc_prop_associations.Rd
man/run_fgsea.Rd
man/get_min_sig_genes.Rd
man/get_num_batch_ranks.Rd
man/run_tucker_ica.Rd
man/plot_subclust_associations.Rd
man/shuffle_fibers.Rd
man/norm_var_helper.Rd
man/get_sums.Rd
man/scale_fontsize.Rd
man/get_one_factor_gene_pvals.Rd
man/get_all_lds_factor_plots.Rd
man/plot_multi_module_enr.Rd
man/get_ctype_prop_associations.Rd
man/get_module_enr.Rd
man/get_gene_set_vectors.Rd
man/clean_data.Rd
man/get_subclust_umap.Rd
man/convert_gn.Rd
man/determine_ranks_tucker.Rd
