merge_small_clusts: Merge small subclusters into larger ones

In scITD: Single-Cell Interpretable Tensor Decomposition

Merge small subclusters into larger ones

Description

Merge small subclusters into larger ones

Usage

merge_small_clusts(con, clusts, min_cells_group)

Arguments

con	conos Object for the dataset with umap projection and groups as cell types
clusts	character The initially assigned subclusters by leiden clustering
min_cells_group	numeric The minimum allowable cluster size

Value

The subcluster labels with small clusters below the size threshold merged into the nearest larger cluster.

scITD documentation built on Sept. 8, 2023, 5:11 p.m.