get_sums: Calculates factor-stratified sums for each column. Adapted...

In scITD: Single-Cell Interpretable Tensor Decomposition

Calculates factor-stratified sums for each column. Adapted from pagoda2. https://github.com/kharchenkolab/pagoda2/blob/main/src/misc2.cpp

Description

Calculates factor-stratified sums for each column. Adapted from pagoda2. https://github.com/kharchenkolab/pagoda2/blob/main/src/misc2.cpp

Usage

get_sums(sY, rowSel)

Arguments

sY	sparse matrix Gene by cell matrix of counts
rowSel	factor The donor that each cell is from

Value

matrix of summed counts per gene per sample

scITD documentation built on Sept. 8, 2023, 5:11 p.m.