plot_gsea_hmap_w_similarity: Plot already computed enriched gene sets to show semantic...

In scITD: Single-Cell Interpretable Tensor Decomposition

Plot already computed enriched gene sets to show semantic similarity between sets

Description

Plot already computed enriched gene sets to show semantic similarity between sets

Usage

plot_gsea_hmap_w_similarity(
  container,
  factor_select,
  direc,
  thresh,
  exclude_words = character(0)
)

Arguments

container	environment Project container that stores sub-containers for each cell type as well as results and plots from all analyses
factor_select	numeric The factor to plot
direc	character Set to either 'up' or 'down' to use the appropriate sets
thresh	numeric Pvalue threshold to use for including gene sets in the heatmap
exclude_words	character Vector of words to exclude from word cloud (default=character(0))

Value

No value is returned. A heatmap showing enriched gene sets clustered by semantic similarity is drawn.

scITD documentation built on Sept. 8, 2023, 5:11 p.m.