normalize_counts: Helper function to normalize and log-transform count data

In scITD: Single-Cell Interpretable Tensor Decomposition

Helper function to normalize and log-transform count data

Description

Helper function to normalize and log-transform count data

Usage

normalize_counts(count_data, scale_factor = 10000)

Arguments

count_data	matrix or sparse matrix Gene by cell matrix of counts
scale_factor	numeric The number that gets multiplied by fractional counts during normalization of the pseudobulked data (default=10000)

Value

The normalized, log-transformed matrix.

scITD documentation built on Sept. 8, 2023, 5:11 p.m.