plot_select_sets: Plot enrichment results for hand picked gene sets

In scITD: Single-Cell Interpretable Tensor Decomposition

Plot enrichment results for hand picked gene sets

Description

Plot enrichment results for hand picked gene sets

Usage

plot_select_sets(
  container,
  factors_all,
  sets_plot,
  color_sets = NULL,
  cl_rows = FALSE,
  h_w = NULL,
  myfontsize = 8
)

Arguments

container	environment Project container that stores sub-containers for each cell type as well as results and plots from all analyses
factors_all	numeric Vector of one or more factor numbers to get plots for
sets_plot	character Vector of gene set names to show enrichment values for
color_sets	named character Values are colors corresponding to each set, with names as the gene set names (default=NULL)
cl_rows	logical Set to TRUE to cluster gene set results (default=FALSE)
h_w	numeric Vector specifying height and width (defualt=NULL)
myfontsize	numeric Gene set label fontsize (default=8)

Value

A list with a ComplexHeatmap object of select enriched gene sets as the first element and with a legend object as the second element.

scITD documentation built on Sept. 8, 2023, 5:11 p.m.