plot_mod_and_lig: Plot trio of associations between ligand expression, module...

In scITD: Single-Cell Interpretable Tensor Decomposition

Plot trio of associations between ligand expression, module eigengenes, and factor scores

Description

Plot trio of associations between ligand expression, module eigengenes, and factor scores

Usage

plot_mod_and_lig(container, factor_select, mod_ct, mod, lig_ct, lig)

Arguments

container	environment Project container that stores sub-containers for each cell type as well as results and plots from all analyses
factor_select	numeric The factor to use
mod_ct	character The name of the cell type for the corresponding module
mod	numeric The number of the corresponding module
lig_ct	character The name of the cell type where the ligand is expressed
lig	character The name of the ligand to use

Value

A cowplot figure of ggplot objects for the three associations scatter plots.

scITD documentation built on Sept. 8, 2023, 5:11 p.m.