plot_gsea_sub: Look at enriched gene sets from a cluster of semantically...
In scITD: Single-Cell Interpretable Tensor Decomposition
plot_gsea_sub R Documentation
Look at enriched gene sets from a cluster of semantically similar gene sets.
Uses the results from previous run of plot_gsea_hmap_w_similarity()
Description
Look at enriched gene sets from a cluster of semantically similar gene sets.
Uses the results from previous run of plot_gsea_hmap_w_similarity()
Usage
plot_gsea_sub(container, clust_select, thresh = 0.05)
Arguments
container
environment Project container that stores sub-containers
for each cell type as well as results and plots from all analyses
clust_select
numeric The cluster to plot gene sets from. On the previous
semantic similarity plot, cluster numbering starts from the top as 1.
thresh
numeric Color threshold to use for showing significance (default=0.05)
Value
A heatmap plot from ComplexHeatmap showing one semantic similarity cluster
of enriched gene sets with adjusted p-values for each cell type.
scITD documentation built on Sept. 8, 2023, 5:11 p.m.
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| plot_gsea_sub | R Documentation |
Look at enriched gene sets from a cluster of semantically similar gene sets. Uses the results from previous run of plot_gsea_hmap_w_similarity()
Description
Look at enriched gene sets from a cluster of semantically similar gene sets. Uses the results from previous run of plot_gsea_hmap_w_similarity()
Usage
plot_gsea_sub(container, clust_select, thresh = 0.05)
Arguments
container |
environment Project container that stores sub-containers for each cell type as well as results and plots from all analyses |
clust_select |
numeric The cluster to plot gene sets from. On the previous semantic similarity plot, cluster numbering starts from the top as 1. |
thresh |
numeric Color threshold to use for showing significance (default=0.05) |
Value
A heatmap plot from ComplexHeatmap showing one semantic similarity cluster of enriched gene sets with adjusted p-values for each cell type.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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