plot_gsea_hmap: Plot enriched gene sets from all cell types in a heatmap

In scITD: Single-Cell Interpretable Tensor Decomposition

Plot enriched gene sets from all cell types in a heatmap

Description

Plot enriched gene sets from all cell types in a heatmap

Usage

plot_gsea_hmap(container, factor_select, thresh)

Arguments

container	environment Project container that stores sub-containers for each cell type as well as results and plots from all analyses
factor_select	numeric The factor to plot
thresh	numeric Pvalue threshold to use for including gene sets in the heatmap

Value

A stacked heatmap object from ComplexHeatmap.

scITD documentation built on Sept. 8, 2023, 5:11 p.m.