norm_var_helper: Calculates the normalized variance for each gene. This is...

In scITD: Single-Cell Interpretable Tensor Decomposition

Calculates the normalized variance for each gene. This is adapted from pagoda2. https://github.com/kharchenkolab/pagoda2/blob/main/R/Pagoda2.R Generally, this should be done through calling the form_tensor() wrapper function.

Description

Calculates the normalized variance for each gene. This is adapted from pagoda2. https://github.com/kharchenkolab/pagoda2/blob/main/R/Pagoda2.R Generally, this should be done through calling the form_tensor() wrapper function.

Usage

norm_var_helper(scMinimal)

Arguments

scMinimal

environment A sub-container for the project typically consisting of gene expression data in its raw and processed forms as well as metadata

Value

A list with the first element containing a vector of the normalized variance for each gene and the second element containing log-transformed adjusted p-values for the overdispersion of each gene.

scITD documentation built on Sept. 8, 2023, 5:11 p.m.