batch_calc_BCSMD: A convenience function for calculating multiple...

In scdhlm: Estimating Hierarchical Linear Models for Single-Case Designs

A convenience function for calculating multiple design-comparable effect sizes from a dataset that compiles data from multiple single-case design studies

Description

Calculates standardized mean difference effect sizes for a data set including one or multiple single-case design studies using the same design (treatment reversal, multiple baseline/probe across participants, replicated multiple baseline across behaviors, or clustered multiple baseline across participants).

Usage

batch_calc_BCSMD(
  data,
  design,
  grouping,
  case,
  phase,
  session,
  outcome,
  cluster = NULL,
  series = NULL,
  center = 0,
  round_session = TRUE,
  treatment_name = NULL,
  FE_base = 0,
  RE_base = 0,
  RE_base_2 = NULL,
  FE_trt = 0,
  RE_trt = NULL,
  RE_trt_2 = NULL,
  corStruct = "AR1",
  varStruct = "hom",
  A = NULL,
  B = NULL,
  D = NULL,
  cover = 95,
  bound = 35,
  symmetric = TRUE,
  ...
)

Arguments

data	A data frame containing SCD data for which design-comparable effect sizes will be calculated.
design	Character string to specify whether data comes from a treatment reversal ("TR"), multiple baseline across participants ("MBP"), replicated multiple baseline across behaviors ("RMBB"), or clustered multiple baseline across participants ("CMB").
grouping	A variable name or list of (unquoted) variable names that uniquely identify each study.
case	A variable name (unquoted) that identifies unique cases within each grouping variable.
phase	A variable name (unquoted) that identifies unique treatment phases.
session	A variable name (unquoted) that contains the measurement times for each data series.
outcome	A variable name (unquoted) that contains the outcome measurements for each data series.
cluster	(Optional) variable name (unquoted) that identifies the unique clusters of cases for CMB designs.
series	(Optional) variable name (unquoted) that identifies the unique data series for RMBB designs.
center	Numeric value for the centering value for session. Default is 0.
round_session	Logical indicating whether to round session to the nearest integer. Defaults to TRUE.
treatment_name	(Optional) character string corresponding to the name of the treatment phase.
FE_base	Vector of integers specifying which fixed effect terms to include in the baseline phase. Setting FE_base = 0 includes only a level. Setting FE_base = c(0,1) includes a level and a linear time trend.
RE_base	Vector of integers specifying which random effect terms to include in the baseline phase. Setting RE_base = 0 includes only levels (i.e., random intercepts). Setting RE_base = c(0,1) includes random levels and random linear trends.
RE_base_2	Vector of integers specifying which random effect terms to include in the baseline phase for the cluster level in clustered multiple baseline design across participants or for the case level in replicated multiple baseline across behaviors. Setting RE_base_2 = 0 includes only levels (i.e., random intercepts). Setting RE_base_2 = c(0,1) includes random levels and random linear trends.
FE_trt	Vector of integers specifying which fixed effect terms to include in the treatment phase. Setting FE_trt = 0 includes only a change in level. Setting FE_trt = c(0,1) includes a change in level and a treatment-by-linear time trend.
RE_trt	Vector of integers specifying which random effect terms to include in the treatment phase. Setting RE_trt = 0 includes only random changes in level. Setting RE_trt = c(0,1) includes random changes in level and random treatment-by-linear time trends.
RE_trt_2	Vector of integers specifying which random effect terms to include in the treatment phase for the cluster level in clustered multiple baseline design across participants or for the case level in replicated multiple baseline across behaviors. Setting RE_trt_2 = 0 includes only random changes in level. Setting RE_trt_2 = c(0,1) includes random changes in level and random treatment-by-linear time trends.
corStruct	(Optional) character string indicating the correlation structure of session-level errors. Options are "AR1" (default), "MA1", or "IID".
varStruct	(Optional) character string indicating the heteroscedasticity structure of session-level errors. Options are "hom" (default) or "het", which allows for the session-level error variances to differ by phase.
A	The time point immediately before the start of treatment in the hypothetical between-group design.
B	The time point at which outcomes are measured in the hypothetical between-group design.
D	Numerical indicating the treatment duration across cases. Note that B = A + D and it is not allowed to specify both B and D.
cover	Confidence level.
bound	Numerical tolerance for non-centrality parameter in qt.
symmetric	If TRUE (the default), use a symmetric confidence interval. If FALSE, use a non-central t approximation to obtain an asymmetric confidence interval.
...	further arguments.

Value

A data frame containing the design-comparable effect size estimate, standard error, confidence interval, and other information, for each unique category of grouping variable(s).

Examples

data(Thiemann2001)
data(Thiemann2004)
datThiemann <- rbind(Thiemann2001, Thiemann2004)

# Change-in-levels model with a fixed treatment effect
batch_calc_BCSMD(data = datThiemann,
                 grouping = Study_ID,
                 design = "RMBB",
                 case = case, series = series, phase = treatment,
                 session = time, outcome = outcome,
                 FE_base = 0, RE_base = 0,
                 RE_base_2 = 0, FE_trt = 0)

# Models with linear time trends in baseline and treatment phase,
# random baseline slope at series level, fixed treatment effects
batch_calc_BCSMD(data = datThiemann,
                 grouping = Study_ID,
                 design = "RMBB",
                 case = case, series = series, phase = treatment,
                 session = time, outcome = outcome,
                 FE_base = c(0,1), RE_base = c(0,1),
                 RE_base_2 = 0, FE_trt = c(0,1))

scdhlm documentation built on May 29, 2024, 12:11 p.m.