addSkeletonMappings: Add default mappings for Cytoscape styles

In stringgaussnet: PPI and Gaussian Network Construction from Transcriptomic Analysis Results Integrating a Multilevel Factor

Description

This function adds common node mappings during the call of addNetworkStyle() for all network classes of the stringgaussnet package.

Usage

addSkeletonMappings(mappings, Annotations, points.size.map, min.points.value,
	max.points.value, points.fill.map, min.points.fill, max.points.fill)

Arguments

mappings	A list where will be added the mapping attributes
Annotations	A boolean variable indicating whether gene annotations were added to the network and then to account this in the node style
points.size.map	Node attribute for which the node size mapping is done
min.points.value	Maximum value of node attribute for which the size is minimal
max.points.value	Minimum value of node attribute for which the size is maximal
points.fill.map	Node attribute for which the node color mapping is done
min.points.fill	Minimum value for which the color mapping is done
max.points.fill	Maximum value for which the color mapping is done

Details

If annotations were added, then the node border color depends on the cellular localization of the gene product.

Value

The mappings list updated, containing added JSON-like lists (converted to JSON objects by the addNetworkStyle function).

See Also

addSkeletonDefaults, addNetworkStyle

stringgaussnet documentation built on May 29, 2017, 10:50 a.m.