checkCytoscapeRunning: Check Cytoscape running
In stringgaussnet: PPI and Gaussian Network Construction from Transcriptomic Analysis Results Integrating a Multilevel Factor
Description
Usage
Arguments
Details
Value
See Also
Examples
View source: R/checkCytoscapeRunning.R
Description
This function checks if Cytoscape is running in your os. It is used in any function to import network into Cytoscape. This communication with Cytoscape is done with the plugin cyREST.
Usage
1
checkCytoscapeRunning(port.number = 1234)
Arguments
port.number
The local port number used by cyREST plugin to communicate with Cytoscape. By default it uses 1234.
Details
If you wish to download Cytoscape, please go here: http://www.cytoscape.org/download.php
If you wish to install the Cytoscape plugin cyREST, please go here: http://apps.cytoscape.org/apps/cyrest
cyREST works as a local API to communicate with Cytoscape through the use of URIs.
Value
Returns TRUE in case of success, or an error message in case of failure.
See Also
Examples
1
# checkCytoscapeRunning()
stringgaussnet documentation built on May 29, 2017, 10:50 a.m.
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Description Usage Arguments Details Value See Also Examples
View source: R/checkCytoscapeRunning.R
Description
This function checks if Cytoscape is running in your os. It is used in any function to import network into Cytoscape. This communication with Cytoscape is done with the plugin cyREST.
Usage
1 | checkCytoscapeRunning(port.number = 1234)
|
Arguments
port.number |
The local port number used by cyREST plugin to communicate with Cytoscape. By default it uses 1234. |
Details
If you wish to download Cytoscape, please go here: http://www.cytoscape.org/download.php If you wish to install the Cytoscape plugin cyREST, please go here: http://apps.cytoscape.org/apps/cyrest cyREST works as a local API to communicate with Cytoscape through the use of URIs.
Value
Returns TRUE in case of success, or an error message in case of failure.
See Also
Examples
1 | # checkCytoscapeRunning()
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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