Description Usage Arguments See Also Examples
View source: R/plot.FactorNetworks.R
This function plots an object of class FactorNetworks for each level. The same function as in simone package is used.
1 2 |
x |
An object of class FactorNetworks |
interactiveMode |
Boolean variable indicating whether the plots are in interactive mode. If false, it is useful for automatically saving plots in a single pdf file. |
... |
Additional parameters from the generic plot function. Not used here. |
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 | # data(SpADataExpression)
# data(SpADEGenes)
# data(SpASamples)
# SpAData<-DEGeneExpr(t(SpADataExpression),SpADEGenes)
# StatusFactor<-paste(SpASamples$status,SpASamples$b27,sep=".")
# names(StatusFactor)=SpASamples$chipnum
# NodesForSIMoNe<-rownames(SpADEGenes)[1:17]
# GaussianSpAData<-DEGeneExpr(t(SpADataExpression[NodesForSIMoNe,]),SpADEGenes[NodesForSIMoNe,])
# GlobalSIMoNeNetNF<-getSIMoNeNet(GaussianSpAData)
# GlobalSIMoNeNet<-FilterEdges(GlobalSIMoNeNetNF,0.4)
# StatusFactorSIMoNeNet<-FactorNetworks(GaussianSpAData,StatusFactor,"SIMoNe")
# StatusFactorSIMoNeNet<-FilterEdges(StatusFactorSIMoNeNet,0.4)
# plot(StatusFactorSIMoNeNet)
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