Description Usage Arguments Value See Also Examples
View source: R/DEGeneExpr.default.R
This function allows to create an object of class DEGeneExpr from expression data and DE genes analysis results.
1 2 | ## Default S3 method:
DEGeneExpr(x, y, Identifier = 0, ...)
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x |
A numeric matrix of expression data with samples as rows and genes as columns. |
y |
Results from DE genes analysis (for example LIMMA). Rows are genes, and columns are gene attributes. This is suggested to have at least fold changes and p-values. |
Identifier |
Which column identifies genes in DEGenesResults? If equals to 0, row names are picked. Identifiers must be identical to column names in DataExpression. |
... |
Other parameters from the generic function. Not used here. |
An object of class DEGenesExpr, which is a list containing DataExpression and DEGenesResults. This object is the basis for using all other functions in the package stringgaussnet.
1 2 3 4 5 | data(SpADataExpression)
data(SpADEGenes)
SpAData<-DEGeneExpr(t(SpADataExpression),SpADEGenes)
print(SpAData)
print(SpAData,10) # Prints only 10 first lines of each matrix.
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