getGenesInformations: Get gene annotations
In stringgaussnet: PPI and Gaussian Network Construction from Transcriptomic Analysis Results Integrating a Multilevel Factor
Description
Usage
Arguments
Details
Value
See Also
View source: R/getGenesInformations.R
Description
This function uses biomaRt and AnnotationDbi to add gene annotations as node attributes in a network from stringgaussnet package.
Usage
1
getGenesInformations(Identifiers, ensembl)
Arguments
Identifiers
Can be Ensembl IDs or HGNC symbols. Ensembl IDs are recommended.
ensembl
A mart dataset object
Details
Firstly, this function adds cellular localizations of gene products. A prioritization is performed to rank gene products localizations from nuclear, the most relevant, and then extracellular, plasma membrane and cytoplasm. Secondly, those annotations are added from biomaRt: chromosome name, band, strand, start and end positions, and gene descriptions.
Value
A matrix of node attributes with annotations.
See Also
getSTRINGNet, getSIMoNeNet, getWGCNANet
stringgaussnet documentation built on May 29, 2017, 10:50 a.m.
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Description Usage Arguments Details Value See Also
View source: R/getGenesInformations.R
Description
This function uses biomaRt and AnnotationDbi to add gene annotations as node attributes in a network from stringgaussnet package.
Usage
1 | getGenesInformations(Identifiers, ensembl)
|
Arguments
Identifiers |
Can be Ensembl IDs or HGNC symbols. Ensembl IDs are recommended. |
ensembl |
A mart dataset object |
Details
Firstly, this function adds cellular localizations of gene products. A prioritization is performed to rank gene products localizations from nuclear, the most relevant, and then extracellular, plasma membrane and cytoplasm. Secondly, those annotations are added from biomaRt: chromosome name, band, strand, start and end positions, and gene descriptions.
Value
A matrix of node attributes with annotations.
See Also
getSTRINGNet, getSIMoNeNet, getWGCNANet
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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