Files in stringgaussnet
PPI and Gaussian Network Construction from Transcriptomic Analysis Results Integrating a Multilevel Factor

inst
inst/doc
inst/doc/stringgaussnet.R inst/doc/stringgaussnet.pdf inst/doc/stringgaussnet.Rmd
NAMESPACE
data
data/SpADEGenes.rda
data/SpASamples.rda
data/SpADataExpression.rda
R
R/WGCNANet.R R/STRINGNet.R R/checkCytoscapeRunning.R R/getMartDatasets.R R/MultiNetworks.R R/DEGeneExpr.R R/addFactorGraphsToCytoscape.R R/print.STRINGNet.R R/FactorNetworks.R R/export.SIMoNeNet.R R/print.FactorNetworks.R R/plot.WGCNANet.R R/ShortPathSTRINGNet.R R/mapAttributes.R R/resetCytoscapeSession.R R/MultiDEGeneExpr.default.R R/SIMoNeNet.R R/addGraphToCytoscape.R R/convertAliases.R R/summary.SIMoNeNet.R R/summary.WGCNANet.R R/SIMoNeNet.default.R R/export.ShortPathSTRINGNet.R R/addNetworkStyle.R R/FilterEdges.ShortPathSTRINGNet.R R/mergeFactorEdges.R R/print.ShortPathSTRINGNet.R R/computeSimilarities.R R/plot.FactorNetworks.R R/pickSIMoNeParam.R R/toCytoscape.R R/MultiDEGeneExpr.R R/addSkeletonMappings.R R/STRINGNet.default.R R/getShortestPaths.R R/export.WGCNANet.R R/FilterEdges.SIMoNeNet.R R/getWGCNANet.R R/addMultiGraphToCytoscape.R R/addSTRINGNetMappings.R R/ShortPathSTRINGNet.default.R R/getSIMoNeNet.R R/plot.SIMoNeNet.R R/FactorNetworks.default.R R/print.WGCNANet.R R/findShortestPathways.R R/getSTRINGNet.R R/summary.ShortPathSTRINGNet.R R/print.MultiNetworks.R R/addWGCNANetMappings.R R/saveCytoscapeSession.R R/FilterEdges.FactorNetworks.R R/print.MultiDEGeneExpr.R R/summary.STRINGNet.R R/print.DEGeneExpr.R R/export.R R/DEGeneExpr.default.R R/export.STRINGNet.R R/getGenesInformations.R R/applyLayout.R R/convertToDistGraph.R R/pickWGCNAParam.R R/as.igraph.stringgaussnet.R R/compareFactorNetworks.R R/addSkeletonDefaults.R R/selectInteractionTypes.R R/applyStyle.R R/MultiNetworks.default.R R/print.SIMoNeNet.R R/computeCombinedScores.R R/addSIMoNeNetMappings.R R/addShortPathSTRINGNetMappings.R R/FilterEdges.R R/WGCNANet.default.R R/mergeGaussEdges.R R/compareGaussNetworks.R
vignettes
vignettes/misc
vignettes/misc/Figure_pickWGCNA.png
vignettes/misc/bibliography.bib
vignettes/misc/Figure_ShortPathNetworks.png
vignettes/misc/Figure_FactorNetworks.png
vignettes/misc/Figure_CompareNetworks.png
vignettes/misc/Figure_Vignette.png
vignettes/stringgaussnet.Rmd
MD5
build
build/vignette.rds
DESCRIPTION
man
man/print.MultiDEGeneExpr.Rd man/plot.WGCNANet.Rd man/MultiNetworks.Rd man/getWGCNANet.Rd man/STRINGNet.default.Rd man/FactorNetworks.Rd man/toCytoscape.Rd man/checkCytoscapeRunning.Rd man/MultiNetworks.default.Rd man/SpADEGenes.Rd man/export.STRINGNet.Rd man/compareGaussNetworks.Rd man/addNetworkStyle.Rd man/DEGeneExpr.Rd man/summary.WGCNANet.Rd man/FilterEdges.FactorNetworks.Rd man/print.FactorNetworks.Rd man/convertAliases.Rd man/stringgaussnet-package.Rd man/computeSimilarities.Rd man/FilterEdges.ShortPathSTRINGNet.Rd man/addGraphToCytoscape.Rd man/STRINGNet.Rd man/addSIMoNeNetMappings.Rd man/addShortPathSTRINGNetMappings.Rd man/export.Rd man/selectInteractionTypes.Rd man/ShortPathSTRINGNet.default.Rd man/compareFactorNetworks.Rd man/getSIMoNeNet.Rd man/mergeGaussEdges.Rd man/export.ShortPathSTRINGNet.Rd man/pickWGCNAParam.Rd man/MultiDEGeneExpr.default.Rd man/applyLayout.Rd man/as.igraph.stringgaussnet.Rd man/summary.SIMoNeNet.Rd man/getMartDatasets.Rd man/addMultiGraphToCytoscape.Rd man/mergeFactorEdges.Rd man/applyStyle.Rd man/FilterEdges.Rd man/convertToDistGraph.Rd man/export.WGCNANet.Rd man/plot.FactorNetworks.Rd man/FactorNetworks.default.Rd man/SIMoNeNet.default.Rd man/SpASamples.Rd man/SIMoNeNet.Rd man/addWGCNANetMappings.Rd man/WGCNANet.default.Rd man/addFactorGraphsToCytoscape.Rd man/getShortestPaths.Rd man/getSTRINGNet.Rd man/addSkeletonMappings.Rd man/print.WGCNANet.Rd man/summary.STRINGNet.Rd man/addSkeletonDefaults.Rd man/SpADataExpression.Rd man/print.SIMoNeNet.Rd man/pickSIMoNeParam.Rd man/print.ShortPathSTRINGNet.Rd man/addSTRINGNetMappings.Rd man/getGenesInformations.Rd man/DEGeneExpr.default.Rd man/export.SIMoNeNet.Rd man/print.DEGeneExpr.Rd man/ShortPathSTRINGNet.Rd man/mapAttributes.Rd man/computeCombinedScores.Rd man/MultiDEGeneExpr.Rd man/saveCytoscapeSession.Rd man/findShortestPathways.Rd man/WGCNANet.Rd man/FilterEdges.SIMoNeNet.Rd man/print.MultiNetworks.Rd man/summary.ShortPathSTRINGNet.Rd man/print.STRINGNet.Rd man/resetCytoscapeSession.Rd man/plot.SIMoNeNet.Rd
stringgaussnet documentation built on May 29, 2017, 10:50 a.m.