Files in stringgaussnet
PPI and Gaussian Network Construction from Transcriptomic Analysis Results Integrating a Multilevel Factor
inst
inst/doc
inst/doc/stringgaussnet.R
inst/doc/stringgaussnet.pdf
inst/doc/stringgaussnet.Rmd
NAMESPACE
data
data/SpADEGenes.rda
data/SpASamples.rda
data/SpADataExpression.rda
R
R/WGCNANet.R
R/STRINGNet.R
R/checkCytoscapeRunning.R
R/getMartDatasets.R
R/MultiNetworks.R
R/DEGeneExpr.R
R/addFactorGraphsToCytoscape.R
R/print.STRINGNet.R
R/FactorNetworks.R
R/export.SIMoNeNet.R
R/print.FactorNetworks.R
R/plot.WGCNANet.R
R/ShortPathSTRINGNet.R
R/mapAttributes.R
R/resetCytoscapeSession.R
R/MultiDEGeneExpr.default.R
R/SIMoNeNet.R
R/addGraphToCytoscape.R
R/convertAliases.R
R/summary.SIMoNeNet.R
R/summary.WGCNANet.R
R/SIMoNeNet.default.R
R/export.ShortPathSTRINGNet.R
R/addNetworkStyle.R
R/FilterEdges.ShortPathSTRINGNet.R
R/mergeFactorEdges.R
R/print.ShortPathSTRINGNet.R
R/computeSimilarities.R
R/plot.FactorNetworks.R
R/pickSIMoNeParam.R
R/toCytoscape.R
R/MultiDEGeneExpr.R
R/addSkeletonMappings.R
R/STRINGNet.default.R
R/getShortestPaths.R
R/export.WGCNANet.R
R/FilterEdges.SIMoNeNet.R
R/getWGCNANet.R
R/addMultiGraphToCytoscape.R
R/addSTRINGNetMappings.R
R/ShortPathSTRINGNet.default.R
R/getSIMoNeNet.R
R/plot.SIMoNeNet.R
R/FactorNetworks.default.R
R/print.WGCNANet.R
R/findShortestPathways.R
R/getSTRINGNet.R
R/summary.ShortPathSTRINGNet.R
R/print.MultiNetworks.R
R/addWGCNANetMappings.R
R/saveCytoscapeSession.R
R/FilterEdges.FactorNetworks.R
R/print.MultiDEGeneExpr.R
R/summary.STRINGNet.R
R/print.DEGeneExpr.R
R/export.R
R/DEGeneExpr.default.R
R/export.STRINGNet.R
R/getGenesInformations.R
R/applyLayout.R
R/convertToDistGraph.R
R/pickWGCNAParam.R
R/as.igraph.stringgaussnet.R
R/compareFactorNetworks.R
R/addSkeletonDefaults.R
R/selectInteractionTypes.R
R/applyStyle.R
R/MultiNetworks.default.R
R/print.SIMoNeNet.R
R/computeCombinedScores.R
R/addSIMoNeNetMappings.R
R/addShortPathSTRINGNetMappings.R
R/FilterEdges.R
R/WGCNANet.default.R
R/mergeGaussEdges.R
R/compareGaussNetworks.R
vignettes
vignettes/misc
vignettes/misc/Figure_pickWGCNA.png
vignettes/misc/bibliography.bib
vignettes/misc/Figure_ShortPathNetworks.png
vignettes/misc/Figure_FactorNetworks.png
vignettes/misc/Figure_CompareNetworks.png
vignettes/misc/Figure_Vignette.png
vignettes/stringgaussnet.Rmd
MD5
build
build/vignette.rds
DESCRIPTION
man
man/print.MultiDEGeneExpr.Rd
man/plot.WGCNANet.Rd
man/MultiNetworks.Rd
man/getWGCNANet.Rd
man/STRINGNet.default.Rd
man/FactorNetworks.Rd
man/toCytoscape.Rd
man/checkCytoscapeRunning.Rd
man/MultiNetworks.default.Rd
man/SpADEGenes.Rd
man/export.STRINGNet.Rd
man/compareGaussNetworks.Rd
man/addNetworkStyle.Rd
man/DEGeneExpr.Rd
man/summary.WGCNANet.Rd
man/FilterEdges.FactorNetworks.Rd
man/print.FactorNetworks.Rd
man/convertAliases.Rd
man/stringgaussnet-package.Rd
man/computeSimilarities.Rd
man/FilterEdges.ShortPathSTRINGNet.Rd
man/addGraphToCytoscape.Rd
man/STRINGNet.Rd
man/addSIMoNeNetMappings.Rd
man/addShortPathSTRINGNetMappings.Rd
man/export.Rd
man/selectInteractionTypes.Rd
man/ShortPathSTRINGNet.default.Rd
man/compareFactorNetworks.Rd
man/getSIMoNeNet.Rd
man/mergeGaussEdges.Rd
man/export.ShortPathSTRINGNet.Rd
man/pickWGCNAParam.Rd
man/MultiDEGeneExpr.default.Rd
man/applyLayout.Rd
man/as.igraph.stringgaussnet.Rd
man/summary.SIMoNeNet.Rd
man/getMartDatasets.Rd
man/addMultiGraphToCytoscape.Rd
man/mergeFactorEdges.Rd
man/applyStyle.Rd
man/FilterEdges.Rd
man/convertToDistGraph.Rd
man/export.WGCNANet.Rd
man/plot.FactorNetworks.Rd
man/FactorNetworks.default.Rd
man/SIMoNeNet.default.Rd
man/SpASamples.Rd
man/SIMoNeNet.Rd
man/addWGCNANetMappings.Rd
man/WGCNANet.default.Rd
man/addFactorGraphsToCytoscape.Rd
man/getShortestPaths.Rd
man/getSTRINGNet.Rd
man/addSkeletonMappings.Rd
man/print.WGCNANet.Rd
man/summary.STRINGNet.Rd
man/addSkeletonDefaults.Rd
man/SpADataExpression.Rd
man/print.SIMoNeNet.Rd
man/pickSIMoNeParam.Rd
man/print.ShortPathSTRINGNet.Rd
man/addSTRINGNetMappings.Rd
man/getGenesInformations.Rd
man/DEGeneExpr.default.Rd
man/export.SIMoNeNet.Rd
man/print.DEGeneExpr.Rd
man/ShortPathSTRINGNet.Rd
man/mapAttributes.Rd
man/computeCombinedScores.Rd
man/MultiDEGeneExpr.Rd
man/saveCytoscapeSession.Rd
man/findShortestPathways.Rd
man/WGCNANet.Rd
man/FilterEdges.SIMoNeNet.Rd
man/print.MultiNetworks.Rd
man/summary.ShortPathSTRINGNet.Rd
man/print.STRINGNet.Rd
man/resetCytoscapeSession.Rd
man/plot.SIMoNeNet.Rd
