print.STRINGNet: Print function for object of class STRINGNet.

In stringgaussnet: PPI and Gaussian Network Construction from Transcriptomic Analysis Results Integrating a Multilevel Factor

Description

This function displays specifically object of class STRINGNet, with previews of edge and node attributes.

Usage

## S3 method for class 'STRINGNet'
print(x, nlimit = 20, ...)

Arguments

x	Object of class STRINGNet
nlimit	Which number of lines to preview for data frames
...	Additional parameters from generic print function

See Also

STRINGNet, STRINGNet.default, getSTRINGNet, summary.STRINGNet, export.STRINGNet

Examples

# data(SpADataExpression)
# data(SpADEGenes)
# SpAData<-DEGeneExpr(t(SpADataExpression),SpADEGenes)

# SpASTRINGNet<-getSTRINGNet(SpAData)
# Can be longer.

# SpASTRINGNet<-getSTRINGNet(SpAData,AddAnnotations=FALSE)
# print(SpASTRINGNet,5)
# summary(SpASTRINGNet)
# PPISpASTRINGNet<-selectInteractionTypes(SpASTRINGNet,
#	c("coexpression","experimental","knowledge"),0.9)

# shortPathSpANet<-getShortestPaths(PPISpASTRINGNet)
# shortPathSpANet<-FilterEdges(shortPathSpANet,2.2)
# print(shortPathSpANet,5)
# summary(shortPathSpANet)

stringgaussnet documentation built on May 29, 2017, 10:50 a.m.