summary.STRINGNet: Summary function for object of class STRINGNet

In stringgaussnet: PPI and Gaussian Network Construction from Transcriptomic Analysis Results Integrating a Multilevel Factor

Description

This function displays specifically a summary object of class STRINGNet, with summary of each kind of interactions, with a distinction of interactions between initial nodes or not.

Usage

## S3 method for class 'STRINGNet'
summary(object, ...)

Arguments

object	Object of class STRINGNet
...	Additional parameters from generic summary function

See Also

STRINGNet, STRINGNet.default, getSTRINGNet, print.STRINGNet, export.STRINGNet

Examples

# data(SpADataExpression)
# data(SpADEGenes)
# SpAData<-DEGeneExpr(t(SpADataExpression),SpADEGenes)

# SpASTRINGNet<-getSTRINGNet(SpAData)
# Can be longer.

# SpASTRINGNet<-getSTRINGNet(SpAData,AddAnnotations=FALSE)
# print(SpASTRINGNet,5)
# summary(SpASTRINGNet)
# PPISpASTRINGNet<-selectInteractionTypes(SpASTRINGNet,
#	c("coexpression","experimental","knowledge"),0.9)

# shortPathSpANet<-getShortestPaths(PPISpASTRINGNet)
# shortPathSpANet<-FilterEdges(shortPathSpANet,2.2)
# print(shortPathSpANet,5)
# summary(shortPathSpANet)

stringgaussnet documentation built on May 29, 2017, 10:50 a.m.