Description Usage Arguments See Also Examples
View source: R/summary.STRINGNet.R
This function displays specifically a summary object of class STRINGNet, with summary of each kind of interactions, with a distinction of interactions between initial nodes or not.
1 2 |
object |
Object of class STRINGNet |
... |
Additional parameters from generic summary function |
STRINGNet
, STRINGNet.default
, getSTRINGNet
, print.STRINGNet
, export.STRINGNet
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 | # data(SpADataExpression)
# data(SpADEGenes)
# SpAData<-DEGeneExpr(t(SpADataExpression),SpADEGenes)
# SpASTRINGNet<-getSTRINGNet(SpAData)
# Can be longer.
# SpASTRINGNet<-getSTRINGNet(SpAData,AddAnnotations=FALSE)
# print(SpASTRINGNet,5)
# summary(SpASTRINGNet)
# PPISpASTRINGNet<-selectInteractionTypes(SpASTRINGNet,
# c("coexpression","experimental","knowledge"),0.9)
# shortPathSpANet<-getShortestPaths(PPISpASTRINGNet)
# shortPathSpANet<-FilterEdges(shortPathSpANet,2.2)
# print(shortPathSpANet,5)
# summary(shortPathSpANet)
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