computeSimilarities: Compute similarities for WGCNA
In stringgaussnet: PPI and Gaussian Network Construction from Transcriptomic Analysis Results Integrating a Multilevel Factor
Description
Usage
Arguments
Details
Value
See Also
View source: R/computeSimilarities.R
Description
This function computes spearman's rhos from an expression data matrix and transforms it into similarity score. This function is used in getWGCNANet().
Usage
1
Arguments
DEGeneExpr
Object of class DEGeneExpr
Details
The similarity score S = (1+rho) / 2. In this way, S is always positive while still keeping the correlation sign.
Value
A matrix of similarity scores.
See Also
stringgaussnet documentation built on May 29, 2017, 10:50 a.m.
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Description Usage Arguments Details Value See Also
View source: R/computeSimilarities.R
Description
This function computes spearman's rhos from an expression data matrix and transforms it into similarity score. This function is used in getWGCNANet().
Usage
1 |
Arguments
DEGeneExpr |
Object of class DEGeneExpr |
Details
The similarity score S = (1+rho) / 2. In this way, S is always positive while still keeping the correlation sign.
Value
A matrix of similarity scores.
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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