ShortPathSTRINGNet: Generic function for objects of class ShortPathSTRINGNet.

In stringgaussnet: PPI and Gaussian Network Construction from Transcriptomic Analysis Results Integrating a Multilevel Factor

Description

Generic function for objects of class ShortPathSTRINGNet. See other functions for more details.

Usage

ShortPathSTRINGNet(x, ...)

Arguments

x	Default parameter for generic functions
...	Additional parameters

See Also

ShortPathSTRINGNet.default, getShortestPaths, print.ShortPathSTRINGNet, summary.ShortPathSTRINGNet, export.ShortPathSTRINGNet

Examples

data(SpADataExpression)
data(SpADEGenes)
SpAData<-DEGeneExpr(t(SpADataExpression),SpADEGenes)

# SpASTRINGNet<-getSTRINGNet(SpAData)
# Can be longer.

# SpASTRINGNet<-getSTRINGNet(SpAData,AddAnnotations=FALSE)
# print(SpASTRINGNet,5)
# summary(SpASTRINGNet)
# PPISpASTRINGNet<-selectInteractionTypes(SpASTRINGNet,
#	c("coexpression","experimental","knowledge"),0.9)

# shortPathSpANet<-getShortestPaths(PPISpASTRINGNet)
# shortPathSpANet<-FilterEdges(shortPathSpANet,2.2)
# print(shortPathSpANet,5)
# summary(shortPathSpANet)

stringgaussnet documentation built on May 29, 2017, 10:50 a.m.