summary.ShortPathSTRINGNet: Summary function for object of class ShortPathSTRINGNet

In stringgaussnet: PPI and Gaussian Network Construction from Transcriptomic Analysis Results Integrating a Multilevel Factor

Description

This function displays specifically a summary object of class ShortPathSTRINGNet, with summary of distance and other edge attributes.

Usage

## S3 method for class 'ShortPathSTRINGNet'
summary(object, ...)

Arguments

object	Object of class ShortPathSTRINGNet
...	Additional parameters from generic summary function

See Also

ShortPathSTRINGNet, ShortPathSTRINGNet.default, getShortestPaths, print.ShortPathSTRINGNet, export.ShortPathSTRINGNet

Examples

data(SpADataExpression)
data(SpADEGenes)
SpAData<-DEGeneExpr(t(SpADataExpression),SpADEGenes)

# SpASTRINGNet<-getSTRINGNet(SpAData)
# Can be longer.

# SpASTRINGNet<-getSTRINGNet(SpAData,AddAnnotations=FALSE)
# print(SpASTRINGNet,5)
# summary(SpASTRINGNet)
# PPISpASTRINGNet<-selectInteractionTypes(SpASTRINGNet,
#	c("coexpression","experimental","knowledge"),0.9)

# shortPathSpANet<-getShortestPaths(PPISpASTRINGNet)
# shortPathSpANet<-FilterEdges(shortPathSpANet,2.2)
# print(shortPathSpANet,5)
# summary(shortPathSpANet)

stringgaussnet documentation built on May 29, 2017, 10:50 a.m.