Description Usage Arguments See Also Examples
View source: R/print.ShortPathSTRINGNet.R
This function displays specifically object of class ShortPathSTRINGNet, with previews of edge and node attributes.
1 2 |
x |
Object of class ShortPathSTRINGNet |
nlimit |
Which number of lines to preview for data frames |
... |
Additional parameters from generic print function |
ShortPathSTRINGNet
, ShortPathSTRINGNet.default
, getShortestPaths
, summary.ShortPathSTRINGNet
, export.ShortPathSTRINGNet
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 | data(SpADataExpression)
data(SpADEGenes)
SpAData<-DEGeneExpr(t(SpADataExpression),SpADEGenes)
# SpASTRINGNet<-getSTRINGNet(SpAData)
# Can be longer.
# SpASTRINGNet<-getSTRINGNet(SpAData,AddAnnotations=FALSE)
# print(SpASTRINGNet,5)
# summary(SpASTRINGNet)
# PPISpASTRINGNet<-selectInteractionTypes(SpASTRINGNet,
# c("coexpression","experimental","knowledge"),0.9)
# shortPathSpANet<-getShortestPaths(PPISpASTRINGNet)
# shortPathSpANet<-FilterEdges(shortPathSpANet,2.2)
# print(shortPathSpANet,5)
# summary(shortPathSpANet)
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