print.ShortPathSTRINGNet: Print function for object of class ShortPathSTRINGNet.

In stringgaussnet: PPI and Gaussian Network Construction from Transcriptomic Analysis Results Integrating a Multilevel Factor

Description

This function displays specifically object of class ShortPathSTRINGNet, with previews of edge and node attributes.

Usage

## S3 method for class 'ShortPathSTRINGNet'
print(x, nlimit = 20, ...)

Arguments

x	Object of class ShortPathSTRINGNet
nlimit	Which number of lines to preview for data frames
...	Additional parameters from generic print function

See Also

ShortPathSTRINGNet, ShortPathSTRINGNet.default, getShortestPaths, summary.ShortPathSTRINGNet, export.ShortPathSTRINGNet

Examples

data(SpADataExpression)
data(SpADEGenes)
SpAData<-DEGeneExpr(t(SpADataExpression),SpADEGenes)

# SpASTRINGNet<-getSTRINGNet(SpAData)
# Can be longer.

# SpASTRINGNet<-getSTRINGNet(SpAData,AddAnnotations=FALSE)
# print(SpASTRINGNet,5)
# summary(SpASTRINGNet)
# PPISpASTRINGNet<-selectInteractionTypes(SpASTRINGNet,
#	c("coexpression","experimental","knowledge"),0.9)

# shortPathSpANet<-getShortestPaths(PPISpASTRINGNet)
# shortPathSpANet<-FilterEdges(shortPathSpANet,2.2)
# print(shortPathSpANet,5)
# summary(shortPathSpANet)

stringgaussnet documentation built on May 29, 2017, 10:50 a.m.