SpASamples: Samples description for SpA example data.
In stringgaussnet: PPI and Gaussian Network Construction from Transcriptomic Analysis Results Integrating a Multilevel Factor
Description
Usage
Format
Details
Source
Examples
Description
The example data provided in our package are transcriptomic profiles of MD-DCs from 9 patients with AS and 10 healthy controls. DE gene statistics group 75 genes identified by LIMMA. Samples description is also provided.
Usage
1
data("SpASamples")
Format
A data frame with 57 observations on the following 6 variables.
chipnumThe sample ID
statusIndicates whether the sample comes from an AS patient (Patient) or control (Control)
LPStimeLPS stimulation duration before MD-DCs differenciation: no stimulation (H0), 6 hours (H6) or 24 hours (H24)
subjectIdentifier indicating sample duplicates
Details
This matrix describes factors attributed to each sample in SpADataExpression, and is used to generate multiple gaussian networks in our package.
Source
Talpin, A. et al. Monocyte-derived dendritic cells from HLA-B27+ axial spondyloarthritis (SpA) patients display altered functional capacity and deregulated gene expression. Arthritis Res. Ther. 16, 417 (2014).
Examples
1
2
stringgaussnet documentation built on May 29, 2017, 10:50 a.m.
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Description Usage Format Details Source Examples
Description
The example data provided in our package are transcriptomic profiles of MD-DCs from 9 patients with AS and 10 healthy controls. DE gene statistics group 75 genes identified by LIMMA. Samples description is also provided.
Usage
1 | data("SpASamples")
|
Format
A data frame with 57 observations on the following 6 variables.
chipnumThe sample ID
statusIndicates whether the sample comes from an AS patient (Patient) or control (Control)
LPStimeLPS stimulation duration before MD-DCs differenciation: no stimulation (H0), 6 hours (H6) or 24 hours (H24)
subjectIdentifier indicating sample duplicates
Details
This matrix describes factors attributed to each sample in SpADataExpression, and is used to generate multiple gaussian networks in our package.
Source
Talpin, A. et al. Monocyte-derived dendritic cells from HLA-B27+ axial spondyloarthritis (SpA) patients display altered functional capacity and deregulated gene expression. Arthritis Res. Ther. 16, 417 (2014).
Examples
1 2 |
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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