summary.SIMoNeNet: Summary function for object of class SIMoNeNet

In stringgaussnet: PPI and Gaussian Network Construction from Transcriptomic Analysis Results Integrating a Multilevel Factor

Description

This function displays specifically a summary object of class SIMoNeNet, with summary of theta scores, spearman's rhos and p-values.

Usage

## S3 method for class 'SIMoNeNet'
summary(object, ...)

Arguments

object	Object of class SIMoNeNet
...	Additional parameters from generic summary function

See Also

SIMoNeNet, SIMoNeNet.default, getSIMoNeNet, print.SIMoNeNet, export.SIMoNeNet, FilterEdges.SIMoNeNet, pickSIMoNeParam

Examples

# data(SpADataExpression)
# data(SpADEGenes)
# SpAData<-DEGeneExpr(t(SpADataExpression),SpADEGenes)

# NodesForSIMoNe<-rownames(SpADEGenes)[1:17]
# GaussianSpAData<-DEGeneExpr(t(SpADataExpression[NodesForSIMoNe,]),SpADEGenes[NodesForSIMoNe,])

# pickSIMoNeParam(GaussianSpAData)

# GlobalSIMoNeNet<-getSIMoNeNet(GaussianSpAData)
# GlobalSIMoNeNet<-FilterEdges(GlobalSIMoNeNet,0.4)
# print(GlobalSIMoNeNet,5)
# summary(GlobalSIMoNeNet)
# plot(GlobalSIMoNeNet)

# export(GlobalSIMoNeNet,"GlobalSIMoNeNet",T)

stringgaussnet documentation built on May 29, 2017, 10:50 a.m.