Description Usage Arguments See Also Examples
View source: R/plot.SIMoNeNet.R
This function plots an object of class SIMoNeNet. The same function as in simone package is used.
1 2 |
x |
An object of class SIMoNeNet |
name |
The name to be displayed as title in the plot |
... |
Additional parameters from the generic plot function. Not used here. |
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 | # data(SpADataExpression)
# data(SpADEGenes)
# SpAData<-DEGeneExpr(t(SpADataExpression),SpADEGenes)
# NodesForSIMoNe<-rownames(SpADEGenes)[1:17]
# GaussianSpAData<-DEGeneExpr(t(SpADataExpression[NodesForSIMoNe,]),SpADEGenes[NodesForSIMoNe,])
# pickSIMoNeParam(GaussianSpAData)
# GlobalSIMoNeNet<-getSIMoNeNet(GaussianSpAData)
# GlobalSIMoNeNet<-FilterEdges(GlobalSIMoNeNet,0.4)
# print(GlobalSIMoNeNet,5)
# summary(GlobalSIMoNeNet)
# plot(GlobalSIMoNeNet)
# export(GlobalSIMoNeNet,"GlobalSIMoNeNet",T)
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