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In viewpoly: A Shiny App to Visualize Genetic Maps and QTL Analysis in Polyploid Species
VIEWpoly Citation
Taniguti, C. H., de Siqueira Gesteira, G., Lau, J., da Silva Pereira, G., Zeng, Z.-B., Byrne, D., Riera-Lizarazu, O., & Mollinari, M. (2022). VIEWpoly: a visualization tool to integrate and explore results of polyploid genetic analysis. Journal of Open Source Software, 7(74), 4242. https://doi.org/10.21105/joss.04242
Genome Browser Framework
JBrowseR
Hershberg, E. A., Stevens, G., Diesh, C., Xie, P., de Jesus Martinez, T., Buels, R., Stein, L., & Holmes, I. (2021). JBrowseR: an R interface to the JBrowse 2 genome browser. Bioinformatics, 37(21), 3914–3915. https://doi.org/10.1093/bioinformatics/btab459
Reporting Genome Browser Results
When publishing candidate genes identified via VIEWgenome:
Include:
1. VIEWpoly citation for visualization
2. JBrowseR citation for browser framework
3. Genome assembly version and citation
4. Annotation version and source
5. QTL confidence interval coordinates
6. Number of genes in intervals
7. Candidate gene selection criteria
Additional Resources
JBrowse Documentation: https://jbrowse.org/jb2/
VIEWpoly Tutorial: https://cristianetaniguti.github.io/viewpoly_vignettes/
Breeding Insight: https://www.breedinginsight.org
Try the viewpoly package in your browser
Any scripts or data that you put into this service are public.
viewpoly documentation built on July 11, 2026, 1:08 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
VIEWpoly Citation
Taniguti, C. H., de Siqueira Gesteira, G., Lau, J., da Silva Pereira, G., Zeng, Z.-B., Byrne, D., Riera-Lizarazu, O., & Mollinari, M. (2022). VIEWpoly: a visualization tool to integrate and explore results of polyploid genetic analysis. Journal of Open Source Software, 7(74), 4242. https://doi.org/10.21105/joss.04242
Genome Browser Framework
JBrowseR
Hershberg, E. A., Stevens, G., Diesh, C., Xie, P., de Jesus Martinez, T., Buels, R., Stein, L., & Holmes, I. (2021). JBrowseR: an R interface to the JBrowse 2 genome browser. Bioinformatics, 37(21), 3914–3915. https://doi.org/10.1093/bioinformatics/btab459
Reporting Genome Browser Results
When publishing candidate genes identified via VIEWgenome:
Include: 1. VIEWpoly citation for visualization 2. JBrowseR citation for browser framework 3. Genome assembly version and citation 4. Annotation version and source 5. QTL confidence interval coordinates 6. Number of genes in intervals 7. Candidate gene selection criteria
Additional Resources
JBrowse Documentation: https://jbrowse.org/jb2/
VIEWpoly Tutorial: https://cristianetaniguti.github.io/viewpoly_vignettes/
Breeding Insight: https://www.breedinginsight.org
Try the viewpoly package in your browser
Any scripts or data that you put into this service are public.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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