API for AlexsLemonade/scpcaTools
Single cell data tools for ScPCA
| Global functions | |
|---|---|
| add_cell_mito_qc | Man page Source code |
| add_cellhash_ids | Man page Source code |
| add_demux_hashedDrops | Man page Source code |
| add_demux_seurat | Man page Source code |
| add_demux_vireo | Man page Source code |
| add_gene_symbols | Man page Source code |
| add_miQC | Man page Source code |
| add_sample_metadata | Man page Source code |
| build_sce | Man page Source code |
| calculate_ilisi | Man page Source code |
| calculate_silhouette_width | Man page Source code |
| calculate_within_batch_ari | Man page Source code |
| check_metadata | Man page Source code |
| cluster_sce | Man page Source code |
| coldata_to_df | Man page Source code |
| collapse_intron_counts | Man page Source code |
| downsample_pcs | Man page Source code |
| filter_counts | Man page Source code |
| filter_pcs | Man page Source code |
| generate_qc_report | Man page Source code |
| get_altexp_attributes | Man page Source code |
| get_altexp_metadata | Man page Source code |
| import_quant_data | Man page Source code |
| integrate_fastmnn | Man page Source code |
| integrate_harmony | Man page Source code |
| integrate_sces | Man page Source code |
| merge_altexp | Man page Source code |
| merge_sce_list | Man page Source code |
| metadata_to_coldata | Man page Source code |
| miQC_nofilter | Man page Source code |
| prepare_altexp_for_merge | Man page Source code |
| prepare_merged_metadata | Man page Source code |
| prepare_sce_for_merge | Man page Source code |
| read_alevin | Man page Source code |
| read_alevin_metadata | Source code |
| read_cellranger | Man page Source code |
| read_kallisto | Man page Source code |
| read_tximport | Man page Source code |
| rowdata_to_df | Man page Source code |
| sce_to_anndata | Man page Source code |
| sce_to_seurat | Man page Source code |
| scpcaTools | Man page |
| scpcaTools-package | Man page |
| silhouette_width_from_pcs | Man page Source code |
| sim_sce | Man page Source code |
| within_batch_ari_from_pcs | Man page Source code |
